# Ucdavis Proteomics Core Pipeline

> UC Davis Proteomics Core pipeline — end-to-end proteomics search + differential expression from raw .raw/.d/.mzML files (DIA-NN / Sage, limpa/limma). Auto-installs its toolchain, derives search parameters from the data type, writes a biological analysis report and a full reproducibility bundle, and packages results into tidy session folders.

## Facts
- Page: https://tashan.sh/capability/plugin-mobinpourvali-de-limp-custom-ucdavis-proteomics-core-pipeline
- tashan id: plugin:mobinpourvali/de-limp-custom/ucdavis-proteomics-core-pipeline
- Source: https://github.com/MobinPourvali/DE-LIMP-custom
- Type: plugin
- Category: database
- tashan score: 45.0 / 100
- Adoption: 7.0
- Upkeep: 99.0
- Freshness: 98.0
- Evidence coverage: 84% of the inputs this score can use
- Health: active
- Instruction depth: not yet graded
- GitHub stars: 0
- Official: no

## Install

```sh
/plugin marketplace add MobinPourvali/DE-LIMP-custom
/plugin install ucdavis-proteomics-core-pipeline@ucdavis-proteomics-core
```

## Security audit
Not scanned. We audit npm-published capabilities; this one has no npm package we can resolve, or has not reached the queue. This is not a clean bill of health.

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Measured 2026-09-13 by tashan (https://tashan.sh) from public evidence. Scorer s5.